Kannazuki no Miko begins in the village of Mahoroba, where time passes slowly for both man and nature. Two students from the village's prestigious Ototachibana Academy might as well be night and day. Himeko is shy and unassertive, while Chikane is bold and elegant. Despite this, they love each other, and nothing can come between them, no matter how hard they try. On the two girls' shared birthday, a sinister voice corrupts one of their friends into attacking them, and just when it seemed grimmest, the lunar and solar priestess powers that lay dormant in the two girls awaken, dispelling the evil. That was only the first hurdle, however. The two must now fend off the countless others who would threaten their well-being—even the people closest to them!

Three hundred years ago, in the frigid land of Siberia, Jubei Yagyu engaged in a fierce battle with Kitaretsusai of the Northern Yagyu clan. The duel was costly, as his daughter Freesia was frozen in suspended animation. As a result of global warming in the present day, Freesia breaks free from her icy grave and moves to Japan as a middle school transfer student, where she befriends Jiyuu Nanohana. Little does Jiyuu know that Freesia is targeting her to acquire the coveted Lovely Eye Patch, which Freesia believes is rightfully hers.

Alternative version of final four episodes of High School DxD BorN.

A few years after they first met, Naomi Armitage and Ross Syllabus have started a family. Despite their normal lives, they must keep their identities a secret because many people believe that Robots do not deserve equal status with humans. Ross has an opportunity to abolish these ideas on Earth through a vote, but organizations in the shadows are working so that it doesn't happen.