As the world accelerates toward its own destruction, Kiba and Cheza—with the help of Tsume, Hige, Toboe, and Blue—race to reach true paradise before the entire world is rendered uninhabitable. Now reunited, Cher and Hubb decide to accompany the wolves in hopes of seeing the journey through to its end, while a distraught and confused Quent wanders aimlessly into the wasteland with his mind fixated on revenge. Meanwhile, Lord Darcia the Third has finally put his plot into motion and pursues Cheza, pitting him against the pack. As everything falls apart yet simultaneously falls into place, the wolves struggle to survive in an increasingly dangerous environment. Though the end draws near, paradise seems further away than ever before.

Yamato Akitsuki travels to Tokyo alone to study in one of the high schools located within the area. He lives in with his aunt who operates a public bath solely for the ladies in the local district and begins his normal high-school life. One day, he chances upon a girl in school and is immediately mesmerized by her beauty. He is shocked when he realizes later that the girl, Suzuka, is actually living next door to him. From then on, Yamato's ordinary life begins to change little by little.

The massive beam of light fired from Eldora's moon has completely shattered the BUILD DiVERS' conception of Gunpla Battle Nexus Online (GBN). This has forced Hiroto Kuga and his teammates to reevaluate their mission on Eldora now that they are faced with potentially very real consequences. Despite this, the BUILD DiVERS rejoin the fight against the One-Eyed to protect what they hold dear. In the battle that concerns the fate of both Earth and Eldora, sparks fly as Hiroto is forced to confront his past amidst the revelations of GBN's shocking secrets. [Written by MAL Rewrite]

The story takes place in a city where it's said that has thousands of levels. In a shutdown area, thousands of levels overlap each other, you couldn't tell the sky from the ground and you couldn't tell which way is up or which way is down. Maybe the original purpose of this story is to unravel the mysteries bound in this time and world. For the humans who found this vast rare multi-level city, the mysterious main character "Kirii" wanders to search for the "Net Terminal Genes" that were not infected. Kirii's burden and his search for the "Net Terminal Genes" is a goal like no other and is very much the mystery of this story. Log1~Log6 contains the story of Cibo that wasn't done in the original works. The Cibo who strayed away with Kirii and wanders about. A disc thrown away in the rubble. Cibo starts downloading. Just who's "Memory" will he end up with? Note: These clips are meant as a bonus to the manga, and should only be taken as such. Do not expect any plot in these. They are merely animated (short) scenes from the manga.