The desperate battle in Kamihama City continues to intensify. With Walpurgis Night changing course for Mitakihara City, all eyes shift toward Embryo Eve—an artificial being, currently dormant, that can allegedly liberate magical girls from their destinies. As the Wings of Magius grow dangerously close to executing their plan, Iroha Tamaki's last chance to stop the organization is quickly fading. Despite the dwindling odds, lingering hope for the dawn of a better future invigorates her final endeavor, while also uncovering memories of a story tampered with by the hands of fate.

Suffering from frequent asthma attacks, young Anna Sasaki is quiet, unsociable, and isolated from her peers, causing her foster parent endless worry. Upon recommendation by the doctor, Anna is sent to the countryside, in hope that the cleaner air and more relaxing lifestyle will improve her health and help clear her mind. Engaging in her passion for sketching, Anna spends her summer days living with her aunt and uncle in a small town near the sea.

One day while wandering outside, Anna discovers an abandoned mansion known as the Marsh House. However, she soon finds that the residence isn't as vacant as it appears to be, running into a mysterious girl named Marnie. Marnie's bubbly demeanor slowly begins to draw Anna out of her shell as she returns night after night to meet with her new friend. But it seems there is more to the strange girl than meets the eye—as her time in the town nears its end, Anna begins to discover the truth behind the walls of the Marsh House.

Omoide no Marnie tells the touching story of a young girl's journey through self-discovery and friendship, and the summer that she will remember for the rest of her life.

The infamous series of unexplainable murders in Hinamizawa have been solved and the chains of fate have broken due to the efforts of Rika Furude and her friends. Rika believes she has finally obtained the normal and peaceful life she desired with her friends; however, she is proven wrong when the wheels of fate begin turning once again after an unfortunate accident. Rika suddenly finds herself in a "perfect" world, the constant cycle of brutal killings having never taken place, where all of her friends are content and satisfied. Not wanting to abandon the world that she fought so hard for, she learns she must destroy an essential "key" to get back. But can Rika abandon the faultless world she is given the chance to live in, after all of her battles have brought her this far?

A hapless country doctor describes with breathless urgency a night-time summons to attend a young patient. Events soon take on a surreal aspect as "unearthly horses" transport him instantaneously to the bedside. The doctor, preoccupied with personal distractions and grievances against those he is employed to care for, fails to find what is revealed to be a vile, fatal wound. He is humiliated by the villagers, who are "always expecting the impossible from the doctor," and doomed to an endless return trip, losing everything.