Taking place one year before the Zentraedi arrive on Earth, Macross Zero chronicles the final days of the war between the U.N. Spacy and anti-U.N. factions. After being shot down by the anti-U.N.'s newest fighter plane, ace pilot Shin Kudo finds himself on the remote island of Mayan, where technology is almost non-existent. While Shin stays on the island to heal his wounds, the tranqulity of the island is shattered by a battle that involves the UN's newest fighter - the VF-0.

We follow the daily life of Shen Shi, a young man looking for his brother. To find him, he goes to the Dali Temple. One thing led to another, he eventually became an officer for Li Bing, a senior official with the appearance of a white cat.

Himawari Hinata recently transfered to Shinobi Gakuen to train to become the best kunoichi she can be. She wanted to be a ninja ever since she was saved by one when she was little. On her first day, she meets Hayato Madenokoji (a new transfer teacher) who saves her life. Hayato does not possess any ninja skills or traits, he is teaching the ninjas about normal society to pay off his debt. However, Himawari notices that Hayato bares the same mark on his neck as the ninja who saved her when she was young.

Short Flash specials streamed alongside with the series.